Publications
2024
"In vivo cell-type and brain region classification via multimodal contrastive learning," Han Yu, et al. bioRxiv 2024.11.05.622159; doi: https://doi.org/10.1101/2024.11.05.622159
"Exploiting correlations across trials and behavioral sessions to improve neural decoding,"Yizi Zhang et al., bioRxiv.posted 15 September 2024, 10.1101/2024.09.14.613047
"A study of animal action segmentation algorithms across supervised, unsupervised, and semi-supervised learning paradigms," Ari Blau, et al. arXiv preprint arXiv:2407.16727, 2024
"Towards a "universal translator" for neural dynamics at single-cell, single-spike resolution,” Yizi Zhang, et al., https://arxiv.org/abs/2407.14668
"Interactive data exploration websites for large-scale electrophysiology," Daniel Birman et al., bioRxiv.posted 10 June 2024, 10.1101/2024.06.07.597950
"A common computational and neural anomaly across mouse models of autism," Jean-Paul Noel, et al., http://biorxiv.org/content/early/2024/05/08/2024.05.08.593232
"Parsing neural dynamics with infinite recurrent switching linear dynamical systems," Geadah V, et al., (2024). International Conference on Learning Representations (ICLR).
"Pre-existing visual responses in a projection-defined dopamine population explain individual learning trajectories," Alejandro Pan Vazquez, et al., Current Biology (2024), https://doi.org/10.1016/j.cub.2024.09.045
"Identifying the factors governing internal state switches during nonstationary sensory decision-making," Zeinab Mohammadi, et al., bioRxiv.posted 4 February 2024, 10.1101/2024.02.02.578482
2023
"Dissecting the Complexities of Learning With Infinite Hidden Markov Models," Sebastian A. Bruijns, et al., bioRxiv, https://doi.org/10.1101/2023.12.22.573001
"Bypassing spike sorting: Density-based decoding using spike localization from dense multielectrode probes," Yizi Zhang et al., Advances in Neural Information Processing Systems 36 (NeurIPS 2023)
"Pinpoint: trajectory planning for multi-probe electrophysiology and injections in an interactive web-based 3D environment," Daniel Birman, et al., bioRxiv, https://doi.org/10.1101/2023.07.14.548952
"A Brain-Wide Map of Neural Activity during Complex Behaviour," International Brain Laboratory et al, bioRxiv, https://doi.org/10.1101/2023.07.04.547681
"Brain-wide representations of prior information in mouse decision-making," Charles Findling et al., bioRxiv, https://doi.org/10.1101/2023.07.04.547684
"Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools," Dan Biderman et al., Nat Methods 21, 1316–1328 (2024). https://doi.org/10.1038/s41592-024-02319-1
"A modular architecture for organizing, processing and sharing neurophysiology data," The International Brain Laboratory et al., Nat Methods, https://doi.org/10.1038/s41592-022-01742-6
2022
"Reproducibility of in-vivo electrophysiological measurements in mice," The International Brain Laboratory et al., in review at eLife, bioRxiv. https://doi.org/10.1101/2022.05.09.491042
"Mice alternate between discrete strategies during perceptual decision-making," Ashwood et al., Nat Neurosci. https://doi.org/10.1038/s41593-021-01007-z
2021
"Accurate localization of linear probe electrode arrays across multiple brains", Liu D Liu et al., eNeuro. 25 October 2021, ENEURO.0241-21.2021
"High-Performance Interactive Scientific Visualization With Datoviz via the Vulkan Low-Level GPU API", Cyrille Rossant et al., Computing in Science & Engineering, vol. 23, no. 04, pp. 85-90, 2021.
"Standardized and reproducible measurement of decision making in mice", The International Brain Laboratory et al., eLife 2021;10:e63711.
"Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders", Matt R. Whiteway et al., PLoS Comput Biol. 2021 Sep 22;17(9):e1009439.
"Decentralized motion inference and registration of Neuropixel data", Erdem Varol et al., IEEE International Conference on Acoustics, Speech and Signal Processing, 2021
"Extracting the Dynamics of Behavior in Decision-Making Experiments", Nicholas A. Roy et al., Neuron. 2021 Feb 17;109(4):597-610.e6.
"Citric Acid Water as an Alternative to Water Restriction for High-Yield Mouse Behavior", Anne E. Urai et al., eNeuro. 2021 Feb 11;8(1):ENEURO.0230-20.2020.
2020
"Knowledge across networks: how to build a global neuroscience collaboration”, Lauren Wool and The International Brain Laboratory, Current Opinion in Neurobiology, 65:100-107.
"Deep Graph Pose: a semi-supervised deep graphical model for improved animal pose tracking”, Anqi Wu et al., Advances in Neural Information Processing Systems 33
"Inferring learning rules from animal decision-making”, Zoe Ashwood et al., Advances in Neural Information Processing Systems 33 Advances in Neural Information Processing Systems 33
"Reverse-engineering Recurrent Neural Network solutions to a hierarchical inference task for mice", Rylan Schaeffer et al., Advances in Neural Information Processing Systems 33
2017
"An International Laboratory for Systems and Computational Neuroscience," The International Brain Laboratory. Neuron 96.6 (2017):1213-1218.
